PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995478.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

YABBY

Protein Properties

Length: 186aa MW: 20418.3 Da PI: 9.4167

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	59.5	1.4e-18	24	71	5	52
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlak 52 s +++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l ++++ XP_024995478.1 24 PSDQHLCYVRCNFCNTLLAVGIPCKRLLDTVTVKCGHCSNLSFLTIRP 71 45679***********************************98888765 PP
2	YABBY	103.6	4.1e-32	99	169	96	165
YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa.hfPk 165 ss++ s++++ +p++p v++PPek+ r Psaynrf+keeiqrikasnP+i hreafs+aaknWa h+P+ XP_024995478.1 99 SSSSSSSTSNEPTSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKASNPQIPHREAFSTAAKNWAgHIPN 169 34444578889999***************************************************978886 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MIMNFEVQAE RVQATNMDTA VQTPSDQHLC YVRCNFCNTL LAVGIPCKRL LDTVTVKCGH 60 CSNLSFLTIR PSPLDHPLQP PPLPPFQTTF SGDFKRGQSS SSSSSTSNEP TSPKAPFVVK 120 PPEKKHRLPS AYNRFMKEEI QRIKASNPQI PHREAFSTAA KNWAGHIPNG SISGSINTGL 180 DLSGLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	3e-54	YABBY family protein