PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995604.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 204aa MW: 22642.5 Da PI: 9.8003

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H XP_024995604.1 40 YTCTFCKREFRSAQALGGHMNVH 62 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MWNSNPVTTK SHDEDDSWEV KAFAEDTKNV MGTTWPPRSY TCTFCKREFR SAQALGGHMN 60 VHRRDRARLH QSQPNLKTPN LPSSTTSSTL LIPTQELVTN GGLCLLYSIP NPNAIFKTSS 120 LNTMKGNPST LFSIAPHLNT DNFMNFLAAV APRPFNSSLS NSSNMEASTP TNYKSNTKVS 180 IDKKRKKTDS TVEGIDLELR LGSM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	187	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	9e-37	C2H2 family protein