PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995605.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 181aa MW: 20138.7 Da PI: 9.9988

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995605.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.5e-05	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H XP_024995605.1 40 YTCTFCKREFRSAQALGGHMNVH 62 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence
MWNSNPVTTK SHDEDDSWEV KAFAEDTKNV MGTTWPPRSY TCTFCKREFR SAQALGGHMN 60 VHRRDRARLH QSQPNLKTPN LPSSTTSSTL LIPTQELVTN GGLCLLYSIP NPNAIFKTSS 120 LNTMKAVAPR PFNSSLSNSS NMEASTPTNY KSNTKVSIDK KRKKTDSTVE GIDLELRLGS 180 M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	164	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	2e-37	C2H2 family protein