PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995619.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 479aa MW: 51672.4 Da PI: 9.1225

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995619.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.2e-06	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k F r nL+ H r H XP_024995619.1 88 YVCEICNKGFQRDQNLQLHRRGH 110 9********************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MSNISGDGGG GSFSSGGLED DGQQRQPPMV NSHTHTHTHT TPLDTGSISQ QLLPDSSKKK 60 KRSLPGTPDP NAQVIALSPT SLMAKNKYVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT 120 STEIIKRVYI CPEPSCIHHN PARALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQCDWK 180 AHSKICGTKE YKCDCGTIFS RRDSFITHRA FCDALAEENS KLTQTLQQNH HSTVQNINPT 240 TSITSPEFSH GGMPDSKNPS ELLPLNIMQG SRGSLFSGSP RNGSPSSLQL GGTTLSSHLT 300 SATALLQKAA QMGATASNGN NNGNNGGMNN YVTTMAPPSY GGGGGGGAYH GADQNLVDQY 360 HTHHSQISGI IGGGFSSQFQ ETSGISRFFN PSINGGGNGD GIGGYSGFMN PSKEVMIMNN 420 NNNNGGHDGN PGMSDSSNPL LRFKRDGNGD NLTVDFMGVG GMRLRSFNEQ HQQQQGMEI

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MSNISGDGGG GSFSSGGLED DGQQRQPPMV NSHTHTHTHT TPLDTGSISQ QLLPDSSKKK  60
KRSLPGTPDP NAQVIALSPT SLMAKNKYVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT  120
STEIIKRVYI CPEPSCIHHN PARALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQCDWK  180
AHSKICGTKE YKCDCGTIFS RRDSFITHRA FCDALAEENS KLTQTLQQNH HSTVQNINPT  240
TSITSPEFSH GGMPDSKNPS ELLPLNIMQG SRGSLFSGSP RNGSPSSLQL GGTTLSSHLT  300
SATALLQKAA QMGATASNGN NNGNNGGMNN YVTTMAPPSY GGGGGGGAYH GADQNLVDQY  360
HTHHSQISGI IGGGFSSQFQ ETSGISRFFN PSINGGGNGD GIGGYSGFMN PSKEVMIMNN  420
NNNNGGHDGN PGMSDSSNPL LRFKRDGNGD NLTVDFMGVG GMRLRSFNEQ HQQQQGMEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	58	87	KKKKRSLPGTPDPNAQVIALSPTSLMAKNK
2	59	88	KKKKRSLPGTPDPNAQVIALSPTSLMAKNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-108	C2H2 family protein