PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995665.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB_related
Protein Properties Length: 338aa    MW: 36430.4 Da    PI: 7.3871
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995665.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-12102146347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Iar     Rt+ q+ s+ qky
   XP_024995665.1 102 PWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKY 146
                      8*****************************89************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MTRRCSHCSN NGHNSRTCPN RGLKLFGVRI TDGSIRKSAS MGNLTHYTGS GSGAFNASFA  60
AAGADLDSPG DTPDHNAAAD GYASEDFVAG SSSSRERKKG VPWTEEEHRM FLLGLQKLGK  120
GDWRGIARNY VISRTPTQVA SHAQKYFIRQ SNMSRRKRRS SLFDIVADDP LDLSMMASHD  180
YNDGNTSQPE TQSINDPMCV PTLEEKEEEC ESTDSTNSNI VEVAADLTTN LMHQEGRQYC  240
YPGMFPAFIP VAIPFWPGGS VPGPQAESHK VLKPTAVHSK NPINVDELVG LSKLSLGKST  300
GDGGPNSLKL VGSLSRPSAF HANNPNQGST GHSPIHAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-112MYB_related family protein