PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995678.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 357aa MW: 40382.8 Da PI: 6.9088

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995678.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.3e-05	190	209	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_024995678.1 190 FSCPLCFKTFNRYNNMQMHM 209 89*****************9 PP
2	zf-C2H2	14.4	0.00011	274	296	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_024995678.1 274 FMCRKCGKAFAVRGDWRTHEKNC 296 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MSSDHPYSTY FNGSWFNLNP NYHYLSSSPA APPPPPLSYS SFTHYYQPSP PSPPLREALP 60 LLSLSPTRRP LNQNQEFPTS TTNNDSSSTT TTTIAMELDH NNKTTTIDDD DHHETVTVAL 120 HLGLPTHSFS EADLIPRLST NSNNNSEADH KEVDQEEEGT NNNGYLTSAL NKGQYWIPTP 180 AQILIGPTQF SCPLCFKTFN RYNNMQMHMW GHGSQYRRGP ESLRGTQPTA MLRLPCYCCA 240 PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW 300 YCSCGSDFKH KRSLKDHIKA FGNGHAAYGI DDCCFELEEE EAASEIEQDN ESSHCDT

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MSSDHPYSTY FNGSWFNLNP NYHYLSSSPA APPPPPLSYS SFTHYYQPSP PSPPLREALP  60
LLSLSPTRRP LNQNQEFPTS TTNNDSSSTT TTTIAMELDH NNKTTTIDDD DHHETVTVAL  120
HLGLPTHSFS EADLIPRLST NSNNNSEADH KEVDQEEEGT NNNGYLTSAL NKGQYWIPTP  180
AQILIGPTQF SCPLCFKTFN RYNNMQMHMW GHGSQYRRGP ESLRGTQPTA MLRLPCYCCA  240
PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW  300
YCSCGSDFKH KRSLKDHIKA FGNGHAAYGI DDCCFELEEE EAASEIEQDN ESSHCDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-123	C2H2 family protein