PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995715.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 299aa MW: 33676.1 Da PI: 8.2873

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995715.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.3	1.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdellv+++k+ G g+W++ ++ g+ R++k+c++rw +yl XP_024995715.1 14 RGPWTQEEDELLVEYIKKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	54	3.9e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++l +++++ lG++ W++Ia+ m+ gRt++++k+ w+++l XP_024995715.1 67 RGPFSPEEEKLVIQLHAILGNR-WAAIAAQMP-GRTDNEIKNLWNTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MGRAPCCEKT GLKRGPWTQE EDELLVEYIK KNGHGSWRSL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGPF SPEEEKLVIQ LHAILGNRWA AIAAQMPGRT DNEIKNLWNT HLRKRLLSIG 120 IDPQTHEPTS VSSPSVGPLK RPSASPSTRH MAQWESARME AEARLSMESS ASVSVLLSSP 180 NKSTTSTDYF LRIWHSEVGE SFQNLNKGKM GCFSPASQTS ESNTTIETEP KPYREPEPRL 240 DGVTFCQGFT RASSPCEMED SSDTSLQLFF DFAGLNDMSF LESNNWFSSS FLRLWVNKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	1e-113	MYB family protein