PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024995887.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 325aa    MW: 37295.9 Da    PI: 5.7754
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024995887.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.94.1e-26958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++ r vtf+kRrng++KKA+ELSvLCd+++a+i+fs++g+l  +s
  XP_024995887.1  9 KRIENNTSRLVTFCKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLNHFS 58
                    79********************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MGRNKLPMKR IENNTSRLVT FCKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLNHFSCK  60
RRTEDVLNRY VNLSDSERGS VIQHREYLNS LLSKIRSEND LAIHIPCPGA IDMQSEEIHQ  120
EISTLQHQLH MAKEQLRIFE PDPTTFTSLY DYESYEKLIY KTLDRVTQRK EYLLSNQPPA  180
YHLRVLQGES SSKNEDINCW PENVCDGANQ MNGQNHQNMF TTASPENTFE ATRNQLTNAI  240
FDPLPKSTMN EEPQSIEGFQ GCNQTEESLQ LWHQSTDEFL SSLMTHDVTF SVTKQNEMGN  300
PSGGMEMVPN QQVDASLLCH QARSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.14e-67MIKC_MADS family protein