PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995934.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 183aa MW: 19544.2 Da PI: 8.0412

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995934.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.1	1.1e-36	13	113	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+k+Cv+apyf +++ +++f++vh++FGa+n kll +p ++r da+ sl+yeA r++dPvyG+v+ +++lqqq+++l+ae XP_024995934.1 13 PCGACKFLRRKCVKGCVFAPYFKSDDggTAEFEAVHRVFGARNAAKLLLITPANRRLDAVVSLCYEAVSRVKDPVYGCVAQVFNLQQQIDNLQAE 107 7*******************9988667************************************************************** PP DUF260 94 lallke 99 la++++ XP_024995934.1 108 LAYVQT 113 9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence
MGGNGGGGGG GSPCGACKFL RRKCVKGCVF APYFKSDDGG TAEFEAVHRV FGARNAAKLL 60 LITPANRRLD AVVSLCYEAV SRVKDPVYGC VAQVFNLQQQ IDNLQAELAY VQTRVSIMKH 120 STSCQSSKNH SPSSFGSTVP SLETPGFSND DSASLDEALF KDIDGLEMLA RELLNKYLPG 180 SKI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45410.1	2e-54	LBD family protein