PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024995935.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 250aa MW: 26199.5 Da PI: 7.8534

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024995935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.7	5.4e-40	26	126	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll +lp ++r+da+ +++yeA+ar+rdP+yG+v++i++lqqq+ +l+ael XP_024995935.1 26 PCGACKFLRRKCVAGCIFAPHFDSDQgAAHFAAVHKVFGASNVSKLLLHLPAQRRHDAVVTICYEAQARLRDPIYGCVSHIFALQQQVVNLQAEL 120 7*********************9989***************************************************************** PP DUF260 95 allkee 100 a+ +++ XP_024995935.1 121 AYFQAH 126 *98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MSSNPSTSSS GGGSSGGGGG GGGGGPCGAC KFLRRKCVAG CIFAPHFDSD QGAAHFAAVH 60 KVFGASNVSK LLLHLPAQRR HDAVVTICYE AQARLRDPIY GCVSHIFALQ QQVVNLQAEL 120 AYFQAHLASL EGPTPPPPPP PHSSVPPPGL TINDLTTASS VLGAYDLSSL LEPMVAPPSW 180 TMQPTRRQMD PDRQFVSRSA TRSLTDLPPS QGGTDDLQEL ARELLHRPSR VSSGSVPCKA 240 EHSSLPPHNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	7e-70	LBD family protein