PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996036.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family YABBY
Protein Properties Length: 219aa    MW: 24302.7 Da    PI: 7.8941
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY231.42.2e-71171833170
           YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                     +   seq+CyvqC+fC+tilavsvP +slf++vtvrCGhCt+llsvn  ++++ll+a+     + + +l ++  ++ +n+ + +  ++++s+   
  XP_024996036.1  17 LSPPSEQLCYVQCKFCETILAVSVPCSSLFTTVTVRCGHCTNLLSVN--MRAHLLPASAAAAAANQLHLGHH-FFSPQNIMEEM--RNTPSNLLM 106
                     56789****************************************55..67788888776444444443333.33444433332..233333333 PP

           YABBY  98 sekl....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     ++ +       + +e+ ++p v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl
  XP_024996036.1 107 NQPIpepfGPVRVDELLKPPVVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 183
                     333322226677889999999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MSSSAAFSPD HHHQHHLSPP SEQLCYVQCK FCETILAVSV PCSSLFTTVT VRCGHCTNLL  60
SVNMRAHLLP ASAAAAAANQ LHLGHHFFSP QNIMEEMRNT PSNLLMNQPI PEPFGPVRVD  120
ELLKPPVVNR PPEKRQRVPS AYNRFIKEEI QRIKAGNPDI SHREAFSAAA KNWAHFPHIH  180
FGLMPDQPLK KPNVCQQEGD DLHTKDGFLA AGNVGVSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.16e-81YABBY family protein