PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996106.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ARF
Protein Properties Length: 586aa    MW: 65841.5 Da    PI: 6.4591
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996106.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-2378178198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv  ++L +gD++vF   + +++
  XP_024996106.1  78 FCKVLTASDTSTHGGFSVLRKHANEClppldMKQPTPTQELVATDLHGIEWRFKHIFRGQPRRHLLTTGWSTFVTCKRLVAGDSFVFL--RGENG 170
                     99****************************977777788*************************************************..44999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_024996106.1 171 ELRVGVRR 178
                     9****997 PP
2Auxin_resp103.72.2e-34204283183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F v+Y+Pr+  s+F++ ++k+ +a+++k++vGmRfkm fe+eds+err++Gt+vgv+d++p +W+ SkWrsLk
  XP_024996106.1 204 ASHAVSTQTRFVVYYKPRT--SQFIIGLNKYIAAVNNKFTVGMRFKMPFEGEDSPERRFTGTIVGVEDISP-QWECSKWRSLK 283
                     789***************6..9***********************************************99.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    
MEQLEASTNQ ELNQRIPLFN LKSKILCRVV HTQLLAEQDT DEVYAQITLL PEPKQSDSDP  60
TSPDECLAEP PRPSVHSFCK VLTASDTSTH GGFSVLRKHA NECLPPLDMK QPTPTQELVA  120
TDLHGIEWRF KHIFRGQPRR HLLTTGWSTF VTCKRLVAGD SFVFLRGENG ELRVGVRRFA  180
RQQSSMPSSV ISSQSMHLGV LATASHAVST QTRFVVYYKP RTSQFIIGLN KYIAAVNNKF  240
TVGMRFKMPF EGEDSPERRF TGTIVGVEDI SPQWECSKWR SLKVQWDEPA SGGRPERVSP  300
WEIETFIIPV PTSLVQPVAV KSKRPRPPVE IPNLAQISCN PDGQRSDYQG SWHPDHTENG  360
NNGCHFRTQM VVDETEDQKG LSVWSPHSTY SVQEILKLPS DSIQSSVDMM KSERSSSCRI  420
FGFDIKIPTK SDGNTASTLS AGILDQKSDL SKDCKDQGPL QVSPKEVQSK HTTSTRSRTK  480
VQMQGMAVGR AVDLTVLKGY DKLIDELEEM FEIKGELHPR DQWEIVFTDD EGDMMLMGDD  540
PWQEFCSMVK RIWICCSQDV KKMRAGSKLS SVDNEVSGFS LEAAEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323327KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0ARF family protein