PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996229.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 275aa MW: 30817.1 Da PI: 6.9016

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996229.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ +Ed+ll d+++ +G g+W++ +++ g+ R++k+c++rw +yl XP_024996229.1 14 RGAWSSDEDKLLTDYIQTHGEGQWRALPSKAGLLRCGKSCRLRWMNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	47.4	4.3e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ ++ + +++++ ++G++ W++Ia +++ gRt++++k++w+ + XP_024996229.1 67 RGNFSSDDNDVIIRLHSLHGNR-WSLIATELP-GRTDNEIKNHWNAH 111 89******************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MGRTPCCSKV GLHRGAWSSD EDKLLTDYIQ THGEGQWRAL PSKAGLLRCG KSCRLRWMNY 60 LRPGIKRGNF SSDDNDVIIR LHSLHGNRWS LIATELPGRT DNEIKNHWNA HLRKMGDDHR 120 PKVTKKKTTK KKRKLDAETT TSSGTEKSKK VKPSDHSAVH FSSSSSSSSS SYSSSSSESV 180 RKNESSDNGM VSGASSSSCT IDLGEADFDF SWSNWTPFLT LEDESSIDGL EDQSFLMDGC 240 DLLITKDDEY ESLMLEKLYH EYLNLLNHED AQGNN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	135	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	1e-59	MYB family protein