PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996248.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 723aa MW: 79563.1 Da PI: 5.9696

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996248.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46	1.2e-14	23	67	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E+ +++a k++G W +I +++g ++t+ q++s+ qk+ XP_024996248.1 23 RERWTEDEHNSFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 67 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MDPYSREKLN IKTRKPYTIT KQRERWTEDE HNSFLEALKL YGRAWQRIEE HIGTKTAVQI 60 RSHAQKFFTK LEKEAVARGI PIRQALDMEI PPPRPKRKPN YPYPRKTGPP NHPHVAENDR 120 IQATLVSSLQ SGIQILDLER KPLPETTSHE ENLENAKLNE QVENAIEGPS ENENSVPKPV 180 EALNPGVFRE FIPALEEVIA HDEANESYIT IETREHQKLD QDGINHTNIT SDTSLFESSH 240 LVHENIIHRQ YSDKLKQPTG NVGALSINDI RGVQNYPRHV PVQVVDGKNL GISAKSSATP 300 DMSFQESTLN KSGEVENPNL FVNIAASAVT GHHNNATRSS SYQTVPTFHP LSSLCDNQEN 360 YRSFFHVSST ISSLIVSSLL QNPAAHAAAS FAATFWHPAT TEASSRDSPS SVQLNSETPS 420 MAAIAAATVA AATAWWAAHG LLPVCTPFYP GYSCTSPFSF GTPIDGNQAR VANNGGEKVP 480 SEGVVQGEKM NAEKGEGFPK EHPPPGSVDL SSSEDSDGQG GKKSNTEPIA GDTKEMAPVT 540 ELHDSSKTNV RKQVDRSSCG SNTTSSSEIE TDALPKHGKE REETKGSDVN LPCIDSISRR 600 CRSTISPNES WKEVSEEGRL AFQALFSREV LPQSFCNVGE ERDDENGEGV SHLDLNRMSQ 660 EAGESNGVDE GLLTMGLGNV KLNIHHTGFK PYKRCSIEAK EGKIVSQQND EKGPKRMRLE 720 AEH

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MDPYSREKLN IKTRKPYTIT KQRERWTEDE HNSFLEALKL YGRAWQRIEE HIGTKTAVQI  60
RSHAQKFFTK LEKEAVARGI PIRQALDMEI PPPRPKRKPN YPYPRKTGPP NHPHVAENDR  120
IQATLVSSLQ SGIQILDLER KPLPETTSHE ENLENAKLNE QVENAIEGPS ENENSVPKPV  180
EALNPGVFRE FIPALEEVIA HDEANESYIT IETREHQKLD QDGINHTNIT SDTSLFESSH  240
LVHENIIHRQ YSDKLKQPTG NVGALSINDI RGVQNYPRHV PVQVVDGKNL GISAKSSATP  300
DMSFQESTLN KSGEVENPNL FVNIAASAVT GHHNNATRSS SYQTVPTFHP LSSLCDNQEN  360
YRSFFHVSST ISSLIVSSLL QNPAAHAAAS FAATFWHPAT TEASSRDSPS SVQLNSETPS  420
MAAIAAATVA AATAWWAAHG LLPVCTPFYP GYSCTSPFSF GTPIDGNQAR VANNGGEKVP  480
SEGVVQGEKM NAEKGEGFPK EHPPPGSVDL SSSEDSDGQG GKKSNTEPIA GDTKEMAPVT  540
ELHDSSKTNV RKQVDRSSCG SNTTSSSEIE TDALPKHGKE REETKGSDVN LPCIDSISRR  600
CRSTISPNES WKEVSEEGRL AFQALFSREV LPQSFCNVGE ERDDENGEGV SHLDLNRMSQ  660
EAGESNGVDE GLLTMGLGNV KLNIHHTGFK PYKRCSIEAK EGKIVSQQND EKGPKRMRLE  720
AEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	3e-42	MYB_related family protein