PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996348.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 349aa MW: 38995.3 Da PI: 6.2355

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.1	9.8e-30	131	191	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g++fprsYYrCt++ +C+++k+v+r++edp+v+eitY+g+H ++ XP_024996348.1 131 DDGYSWRKYGQKDILGAKFPRSYYRCTYRyvhNCMARKQVQRTDEDPTVFEITYRGKHACN 191 8*************************9999************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MDSACIITEL TQGMELAKQL KAILSSECSP VSKQVLIQEI ISSYDRALLI VNWGGDLSGQ 60 TPGLTVAPPM AVLSQPESSV SIDESPQSRD LNPPFENQQD QKVVCKKRKA MPTWRNQVRI 120 STDNGLEGNT DDGYSWRKYG QKDILGAKFP RSYYRCTYRY VHNCMARKQV QRTDEDPTVF 180 EITYRGKHAC NPATARSVAP PQSPEKHDRK QNNHHHNHQL PPQPKSGEML SNLRENLRVS 240 TSDLDATVPC SFSFPSASLG YMENYQQFNF SNETDNGFLQ GYPPSFVSPA TSGSNYFTEW 300 GNDFQHHDDS NLSGMISTTA SATTSPLAFP TDQQDLSPSF PFNNSGFFI

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MDSACIITEL TQGMELAKQL KAILSSECSP VSKQVLIQEI ISSYDRALLI VNWGGDLSGQ  60
TPGLTVAPPM AVLSQPESSV SIDESPQSRD LNPPFENQQD QKVVCKKRKA MPTWRNQVRI  120
STDNGLEGNT DDGYSWRKYG QKDILGAKFP RSYYRCTYRY VHNCMARKQV QRTDEDPTVF  180
EITYRGKHAC NPATARSVAP PQSPEKHDRK QNNHHHNHQL PPQPKSGEML SNLRENLRVS  240
TSDLDATVPC SFSFPSASLG YMENYQQFNF SNETDNGFLQ GYPPSFVSPA TSGSNYFTEW  300
GNDFQHHDDS NLSGMISTTA SATTSPLAFP TDQQDLSPSF PFNNSGFFI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	109	QKVVCKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23810.1	2e-53	WRKY family protein