PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996403.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 434aa MW: 46363.4 Da PI: 7.9159

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996403.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.4e-12	42	67	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ XP_024996403.1 42 DEADCIYYLRTGFCGYGSRCRFNHPR 67 6799********************96 PP
2	zf-CCCH	35.8	1.4e-11	89	113	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++r+G Ck+G++Ck++H++ XP_024996403.1 89 QPVCQYYMRMGMCKFGASCKYHHPR 113 689********************96 PP
3	zf-CCCH	34.4	3.8e-11	135	159	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G +CkF+H++ XP_024996403.1 135 EKECSYYVKTGQCKFGITCKFHHPQ 159 679********************97 PP
4	zf-CCCH	40	6.6e-13	283	309	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G++Ck++H+p XP_024996403.1 283 PGEPECQFYMKTGDCKFGSSCKYHHPP 309 5799*********************97 PP
5	zf-CCCH	36.9	6.2e-12	331	355	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a++G Ck+G++CkF H++ XP_024996403.1 331 APLCSHYAQNGVCKFGPSCKFDHPM 355 68*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MEMSQSDPVT EWSSSGGQIG LEEPMWQLGL GGGSESYPER PDEADCIYYL RTGFCGYGSR 60 CRFNHPRDRG SVVGALRAGG GEYPERIGQP VCQYYMRMGM CKFGASCKYH HPRHGVGSSS 120 TVALNVSGYP LRPSEKECSY YVKTGQCKFG ITCKFHHPQL AGMMPSPPPP LSPGPLSAMP 180 SAMYPNVQSP TVASSQQYGF LAGNWPVGRP PLLPGSYLPG TYGPMLVPPG MLPFPGWNPY 240 QGPVHPAASP NSQPIVGVGP GYAVNQLSPS YPLSKSQNFP ERPGEPECQF YMKTGDCKFG 300 SSCKYHHPPE WSVSKTNFVL SPMGLPLRPG APLCSHYAQN GVCKFGPSCK FDHPMGTLSY 360 SPSASSLADM PVAPYPVGSY IGTLAPSSSS SELRPEVTSG STTMDDGIST SMPSGSKSMQ 420 LSQSTGSSST THNT

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MEMSQSDPVT EWSSSGGQIG LEEPMWQLGL GGGSESYPER PDEADCIYYL RTGFCGYGSR  60
CRFNHPRDRG SVVGALRAGG GEYPERIGQP VCQYYMRMGM CKFGASCKYH HPRHGVGSSS  120
TVALNVSGYP LRPSEKECSY YVKTGQCKFG ITCKFHHPQL AGMMPSPPPP LSPGPLSAMP  180
SAMYPNVQSP TVASSQQYGF LAGNWPVGRP PLLPGSYLPG TYGPMLVPPG MLPFPGWNPY  240
QGPVHPAASP NSQPIVGVGP GYAVNQLSPS YPLSKSQNFP ERPGEPECQF YMKTGDCKFG  300
SSCKYHHPPE WSVSKTNFVL SPMGLPLRPG APLCSHYAQN GVCKFGPSCK FDHPMGTLSY  360
SPSASSLADM PVAPYPVGSY IGTLAPSSSS SELRPEVTSG STTMDDGIST SMPSGSKSMQ  420
LSQSTGSSST THNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-147	C3H family protein