PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996502.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WRKY
Protein Properties Length: 241aa    MW: 27858.5 Da    PI: 6.7188
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996502.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.7e-30121180159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv+rs ++ ++++++YegeHnhe
  XP_024996502.1 121 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQRSVDNDHLLVVIYEGEHNHE 180
                     58***************************99****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MVLDTSRAID LNVTPFHKTD DTPQMNVDLN QMSLENKKLK EMLTIVWDKN TTLQNHVNKL  60
MQDNEVLLNN PHKRKFGQCA EGCASGSTEN LHDHGSLKRP NEGITRVYRR IDDLSDKSMV  120
VKDGYQWRKY GQKVTRDNPS PRAYYKCSFA PSCPVKKKVQ RSVDNDHLLV VIYEGEHNHE  180
SMEKEPEIQT SSISRLNSPM EMLKYDQVLV EQMANSLRRK PDFIEDLADA ISSNILEYEL  240
F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-49WRKY family protein