PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996504.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WRKY
Protein Properties Length: 233aa    MW: 26915.5 Da    PI: 6.9488
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.48.2e-30113172159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv+rs ++ ++++++YegeHnhe
  XP_024996504.1 113 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQRSVDNDHLLVVIYEGEHNHE 172
                     58***************************99****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MVLDTSRAID LNVTPFHKTD DTPMSLENKK LKEMLTIVWD KNTTLQNHVN KLMQDNEVLL  60
NNPHKRKFGQ CAEGCASGST ENLHDHGSLK RPNEGITRVY RRIDDLSDKS MVVKDGYQWR  120
KYGQKVTRDN PSPRAYYKCS FAPSCPVKKK VQRSVDNDHL LVVIYEGEHN HESMEKEPEI  180
QTSSISRLNS PMEMLKYDQV LVEQMANSLR RKPDFIEDLA DAISSNILEY ELF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-46WRKY family protein