PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996505.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WRKY
Protein Properties Length: 236aa    MW: 27354.7 Da    PI: 6.6335
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.6e-29118177159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +C+vkkkv++s +d ++++++Yeg Hnhe
  XP_024996505.1 118 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCTVKKKVQKSVDDAHLLVVIYEGVHNHE 177
                     58***************************99****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MVDTSLGIDL NVTPFHKTDD TPMNNDLTRM SLENKKLREK LTTVWDKNNT LQNHVNKLMQ  60
DHELLVNNLN KRKFVECEEG NTSGRTETLH QGSLKRPNEG VTRVYRRTDD PSDKSMVVKD  120
GYQWRKYGQK VTRDNPSPRA YYKCSFAPSC TVKKKVQKSV DDAHLLVVIY EGVHNHESME  180
KEPDDTSNRR LNSPMEMLKY DEALVEQMAN SLRRNPDFIE DLADAISSNI LEYDLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-48WRKY family protein