PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996532.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 217aa MW: 25041.7 Da PI: 9.4439

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996532.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.6	8e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdae+a+iifs++ klye++s XP_024996532.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSPRSKLYEFAS 59 8***********************************************86 PP
2	K-box	68.7	1.9e-23	80	171	7	98
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +s + ++ ++l+q ++ + k+ie L+ ++R+llGe+L+s +++eL ++eqqLe+s+ iR++K+++++eqi++l ke+ l +en +L++k XP_024996532.1 80 NSPCPEDVQHLRQLATGMAKQIELLEVTKRKLLGEGLGSTTIEELLHIEQQLERSVCIIRARKMQVYYEQIQQLHAKEQTLASENATLNEKC 171 446677899*******************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEIALIIFSP RSKLYEFASS 60 SMKETIERYR SHVKEIRTQN SPCPEDVQHL RQLATGMAKQ IELLEVTKRK LLGEGLGSTT 120 IEELLHIEQQ LERSVCIIRA RKMQVYYEQI QQLHAKEQTL ASENATLNEK CHFVNEQGSK 180 ERGANFVVTE NEDTISDVET DLFIGQAKWK TKKDRPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	1e-68	MIKC_MADS family protein