PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996556.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 640aa MW: 71856.1 Da PI: 7.7242

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996556.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C + F ++ n++rH+r+H XP_024996556.1 77 KCDKCAREFCSPINYRRHMRVH 98 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence
MPVAKLLGTG IPDAMKSEEG TDSLDTFIRQ AVGKEPLFSF SRTGDSPMQW IQLLHALDQQ 60 DLPGWPLLAP MKVQMQKCDK CAREFCSPIN YRRHMRVHRR SMNIHKEPQK YRDLLGAFWD 120 KLSYDEAKDI MSFKDVNLEE VPGSSIVRNI AANLRKPVFL SLPQVYVKAG SALVDIVQGR 180 PSRLPISSEE LFSLLDDASE KTFLCAGTAE SLQKYVFDGE AGKIGLEMKN LIACTSFLAE 240 QKLVKAWLAD KDAEALRCQK LLVEEEEAAQ RRQAELLERK RQRKIRQKEQ RAKDHSNGMK 300 VDLYTASDIF ESIPSAETSS SQTSPQVNPL IPDEHVATPL DPSSNEEVVN IEAQGGCSSD 360 HSDTAATEQQ KMQENGSQHF IARWQAQKAR EQRVNGSKVW TKKPKFENGG RELVKSRVQN 420 DAIYQTTQTN CQLMIGSISV TVRNCQAEFE EKVDREIKTN SVQNGTNRST LKFWRPRNDT 480 RGQLAYRGNG QILKENATPE NGTLSSENDH QSCDLNGNDI RGTDDSNVQV ENSAMPKPMP 540 FSIDAAKAFL AQRWKEAISG DHVKLVLSSV AEQPPGQLDF EENRQVAESE DPMVVGSSKG 600 RLGKVAEIDS TTHTNVKPKF RTKPEKNMKT KYIPKQRAVY

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence

MPVAKLLGTG IPDAMKSEEG TDSLDTFIRQ AVGKEPLFSF SRTGDSPMQW IQLLHALDQQ  60
DLPGWPLLAP MKVQMQKCDK CAREFCSPIN YRRHMRVHRR SMNIHKEPQK YRDLLGAFWD  120
KLSYDEAKDI MSFKDVNLEE VPGSSIVRNI AANLRKPVFL SLPQVYVKAG SALVDIVQGR  180
PSRLPISSEE LFSLLDDASE KTFLCAGTAE SLQKYVFDGE AGKIGLEMKN LIACTSFLAE  240
QKLVKAWLAD KDAEALRCQK LLVEEEEAAQ RRQAELLERK RQRKIRQKEQ RAKDHSNGMK  300
VDLYTASDIF ESIPSAETSS SQTSPQVNPL IPDEHVATPL DPSSNEEVVN IEAQGGCSSD  360
HSDTAATEQQ KMQENGSQHF IARWQAQKAR EQRVNGSKVW TKKPKFENGG RELVKSRVQN  420
DAIYQTTQTN CQLMIGSISV TVRNCQAEFE EKVDREIKTN SVQNGTNRST LKFWRPRNDT  480
RGQLAYRGNG QILKENATPE NGTLSSENDH QSCDLNGNDI RGTDDSNVQV ENSAMPKPMP  540
FSIDAAKAFL AQRWKEAISG DHVKLVLSSV AEQPPGQLDF EENRQVAESE DPMVVGSSKG  600
RLGKVAEIDS TTHTNVKPKF RTKPEKNMKT KYIPKQRAVY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-128	C2H2 family protein