PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996649.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 480aa MW: 53491 Da PI: 8.6569

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996649.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.9	5.7e-19	55	98	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT +Ed ll+d+vk++ g++Wk+Ia++++ gRt+ qc +rwqk+l XP_024996649.1 55 WTDDEDNLLADVVKKFNGRNWKKIAQYIP-GRTDVQCLHRWQKVL 98 ***************************.**********986 PP
2	Myb_DNA-binding	55.4	1.4e-17	104	150	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ +++ v+++G W+ Ia++++ gR +kqc++rw+++l XP_024996649.1 104 KGPWSKEEDDCIIRMVEKHGCMKWSVIAKYLP-GRIGKQCRERWHNHL 150 79****************99******.***********97 PP
3	Myb_DNA-binding	52.2	1.4e-16	156	198	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+eE+ l ++++ +G++ W+ Iar ++ gRt++ +k++w+ XP_024996649.1 156 KDTWTKEEESTLTHYHQIYGNK-WAEIARFLP-GRTDNAIKNHWN 198 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MIGVKKERHA SDFTKEVGFT SSSSISNSSC DANTPRSRSS CGSGNQTKRS SQAGWTDDED 60 NLLADVVKKF NGRNWKKIAQ YIPGRTDVQC LHRWQKVLNP EIVKGPWSKE EDDCIIRMVE 120 KHGCMKWSVI AKYLPGRIGK QCRERWHNHL DPAIKKDTWT KEEESTLTHY HQIYGNKWAE 180 IARFLPGRTD NAIKNHWNCS FKRKLDLNMP PMLPSNIQET THTDLHNSEI KNEGRGLSVV 240 QRKTGQKRLF GRGNSLENDL NACSTDLALG TGGDACLGFA RYANGCGFKS PPNRLPLAVL 300 DPTKSSQMIS EPCKRRRIDE INDLKLGSSP NSLFLSLSTF GHTDSNSTKN GTSLTLENSF 360 RSENGRFSCS TPPDLTLSIS YSPKSAISYE NPPSIMSKKA GGVNGSCPST PDQDDCSEEI 420 RTTGSENMKQ GSDWWVHRSQ TLLGRRLDYV FSSEWDPTTV KCCNSSSMTP SLNVNMGTGC

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MIGVKKERHA SDFTKEVGFT SSSSISNSSC DANTPRSRSS CGSGNQTKRS SQAGWTDDED  60
NLLADVVKKF NGRNWKKIAQ YIPGRTDVQC LHRWQKVLNP EIVKGPWSKE EDDCIIRMVE  120
KHGCMKWSVI AKYLPGRIGK QCRERWHNHL DPAIKKDTWT KEEESTLTHY HQIYGNKWAE  180
IARFLPGRTD NAIKNHWNCS FKRKLDLNMP PMLPSNIQET THTDLHNSEI KNEGRGLSVV  240
QRKTGQKRLF GRGNSLENDL NACSTDLALG TGGDACLGFA RYANGCGFKS PPNRLPLAVL  300
DPTKSSQMIS EPCKRRRIDE INDLKLGSSP NSLFLSLSTF GHTDSNSTKN GTSLTLENSF  360
RSENGRFSCS TPPDLTLSIS YSPKSAISYE NPPSIMSKKA GGVNGSCPST PDQDDCSEEI  420
RTTGSENMKQ GSDWWVHRSQ TLLGRRLDYV FSSEWDPTTV KCCNSSSMTP SLNVNMGTGC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	314	318	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	4e-80	MYB family protein