PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996709.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 635aa MW: 68775.1 Da PI: 5.2117

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996709.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.3	3e-09	241	262	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++far G+Ck G +CkFaHg XP_024996709.1 241 RPCMYFAR-GFCKNGTSCKFAHG 262 69****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
MDTIEATKMV MSRIQNIDPE NASKIMGYIL IQDQGENEMI RLAFGPENLL ASVIKQAKAF 60 LDISSNTSSA PSSPSPFGHQ RSPRIIIPNN GFHHMNPPPP LSPHSPWSSS GSFPDRRSSP 120 RAASYASVVN GGGSSGSFYN NFGDVTEDYS SNSGLQVVTD QLSFLDNSKN VDFMDPIMSP 180 GGRSDSILFP YPNSSTDWAA DAGNCGDAHH HLHRRSCSVN DMFLGGGGGS DDVGSGLGGW 240 RPCMYFARGF CKNGTSCKFA HGNGGFGDEM CLGSSSPTAV VGSPTGNIDK IEEFLRIKAI 300 QQQQRIAAMA AGGAHPFPFS RCMNFLNESP RSPSAALMMG EDFHKFGRFR PDRHDLAAMG 360 LGNSSSSSRQ IYLTFPADST FKEEDVSNYF RKHQQQIERG DFSGCLSPSV LESAEPFDHI 420 PFGARMFNHE MMLRRKLEGR AELQQAIDLQ DRKLMNMQLT DLNNHQLHHN LAPVSSPTLC 480 HAQTNQSLLL SSDGNNENVV SGDVNGSGTQ GSTMDPITNA SDLKMPLEVN DDDGNNSGNS 540 SEKEENSNLS EIYNHESFEH ILPDNLFASP TKTTATDHQS IFSMPEADGG VSAPSSSSDT 600 TPVLPANSAA LNMASLKSCY FQMPRSFCGQ EAIEM

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

MDTIEATKMV MSRIQNIDPE NASKIMGYIL IQDQGENEMI RLAFGPENLL ASVIKQAKAF  60
LDISSNTSSA PSSPSPFGHQ RSPRIIIPNN GFHHMNPPPP LSPHSPWSSS GSFPDRRSSP  120
RAASYASVVN GGGSSGSFYN NFGDVTEDYS SNSGLQVVTD QLSFLDNSKN VDFMDPIMSP  180
GGRSDSILFP YPNSSTDWAA DAGNCGDAHH HLHRRSCSVN DMFLGGGGGS DDVGSGLGGW  240
RPCMYFARGF CKNGTSCKFA HGNGGFGDEM CLGSSSPTAV VGSPTGNIDK IEEFLRIKAI  300
QQQQRIAAMA AGGAHPFPFS RCMNFLNESP RSPSAALMMG EDFHKFGRFR PDRHDLAAMG  360
LGNSSSSSRQ IYLTFPADST FKEEDVSNYF RKHQQQIERG DFSGCLSPSV LESAEPFDHI  420
PFGARMFNHE MMLRRKLEGR AELQQAIDLQ DRKLMNMQLT DLNNHQLHHN LAPVSSPTLC  480
HAQTNQSLLL SSDGNNENVV SGDVNGSGTQ GSTMDPITNA SDLKMPLEVN DDDGNNSGNS  540
SEKEENSNLS EIYNHESFEH ILPDNLFASP TKTTATDHQS IFSMPEADGG VSAPSSSSDT  600
TPVLPANSAA LNMASLKSCY FQMPRSFCGQ EAIEM