PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996712.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 246aa    MW: 26077.3 Da    PI: 9.2481
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.25.1e-12150175126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C  + rtG C+yG++C FaHg
  XP_024996712.1 150 WKTKICYKWERTGNCPYGSKCIFAHG 175
                     8************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MNGGRDGRNI IHIIGGHGPR RGADNRDDQP VSGREEFEIP SLGSPRFIIE KLRSSRVRHC  60
RKFSSEEGCP FGDKCTYLHD DKMKGRERTA ILLGPGSSVG YGNGGATGSG SGTAAAPPLA  120
PPPLALPLAA APAAAPLVSA ASNSTVKPSW KTKICYKWER TGNCPYGSKC IFAHGAAELH  180
RYGGGLLVDD EANPNQQVNV VAATRSSVAH VGGSGLPPAT SERPVRKWKG PDKISRIYGD  240
WIDDLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.18e-40C3H family protein