PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996858.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 254aa    MW: 28906.4 Da    PI: 4.9683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996858.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-2080128355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAaka+++a+ +++g
  XP_024996858.1  80 YRGIRRRP-WGKWAAEIRDPQ----QgVRVWLGTYNTAEEAAKAYDEAATRIRG 128
                     9*******.**********94....25***********************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MCGGAVISDV DPIVKRSRKL TSDDLWNEFE TYDLFAWDIK PQSLLRTTRN DDYTSKRKQG  60
SEKQTPKAME KKTKLRKNLY RGIRRRPWGK WAAEIRDPQQ GVRVWLGTYN TAEEAAKAYD  120
EAATRIRGDK AKLNFPQPPP TPPPATDSHH PIDHELPPPP PELMDEYEFK GQIETIIEST  180
HPMAYEQLPA PHALMMDYGG LPNHPTTNQY ELSEQILNLE SFLGLEHEST EFDGLGCESG  240
SGDLWALDEF PVTI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17187KKTKLRKNLYRGIRRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-37ERF family protein