PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024996917.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 350aa MW: 37608.6 Da PI: 6.8399

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024996917.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.3	3e-12	103	147	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Iar Rt+ q+ s+ qky XP_024996917.1 103 PWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKY 147 8***************************89**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MTRRCSHCSN NGHNSRTCPN RGVKLFGVRI TDGSIRKSAS MGNLTHYTGS GSNNFLNGFA 60 GGGGTDVDSP GDTPDHNAAA DGYGSEDFVA GSSSSRERKK GVPWTEEEHR MFLLGLQKLG 120 KGDWRGIARN YVISRTPTQV ASHAQKYFIR QSNMSRRKRR SSLFDIVADD SPDTHMVSSL 180 DYPAGNPSQP EAQSVNNPLT IPTLEEEECE SMDSANSNTM DPPTDPTHAP LNLEGSQCLY 240 PVMFPTYVSP LIPVAIPYWP GPGSGQTGQD LTSSAKTESH EVLKPTAVHS KNPINVDDLV 300 GMSKLTLGES IGDGAPTSLK LVGGLNRQSA FHANNPGPRT DPNHNPIHAV

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MTRRCSHCSN NGHNSRTCPN RGVKLFGVRI TDGSIRKSAS MGNLTHYTGS GSNNFLNGFA  60
GGGGTDVDSP GDTPDHNAAA DGYGSEDFVA GSSSSRERKK GVPWTEEEHR MFLLGLQKLG  120
KGDWRGIARN YVISRTPTQV ASHAQKYFIR QSNMSRRKRR SSLFDIVADD SPDTHMVSSL  180
DYPAGNPSQP EAQSVNNPLT IPTLEEEECE SMDSANSNTM DPPTDPTHAP LNLEGSQCLY  240
PVMFPTYVSP LIPVAIPYWP GPGSGQTGQD LTSSAKTESH EVLKPTAVHS KNPINVDDLV  300
GMSKLTLGES IGDGAPTSLK LVGGLNRQSA FHANNPGPRT DPNHNPIHAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-124	MYB_related family protein