PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996928.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family C3H
Protein Properties Length: 327aa    MW: 36786.2 Da    PI: 7.2553
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996928.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.3e-09107128426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ GtC++Gd+C +aHg
  XP_024996928.1 107 NPCPEFRK-GTCQRGDTCEYAHG 128
                     59******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MMMIIGRETL HSNPTVQVPP WDSTLDDPTD HIHSVFFDEL EMAGYDEVGE YDDVPMDAFS  60
CDHFRMYEFK VRRCARARSH DWTECPYAHP GEKARRRDPR KFHYSGNPCP EFRKGTCQRG  120
DTCEYAHGVF ECWLHPSRYR TQPCKDGVQC RRRICFFAHT PEQLRLLPVS HNGSNHLESY  180
DGSPSRFGVD SLIGTSPTST LYRSPCSPPL SPVSSIGPNS VNELTSSVRN LQIGNGGRLS  240
MSPMSGFCSP RSLSILRPGY TSLPSTPTRN SSRTCVNSFD LWDQGCTTEE PIMERVESGK  300
EIRAKIYAKL SRENSLGGRV DSSGLVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.15e-98C3H family protein