PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996946.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 225aa    MW: 25522.3 Da    PI: 8.1945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-115196454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     h+e+ErrRR+riN  +++Lr+llP+       K +Ka+ L ++v+ +k+L
  XP_024996946.1 51 RHSEAERRRRKRINGHLATLRTLLPNT-----IKTDKASLLAEVVRRVKEL 96
                    69************************8.....69***********999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MQMQFLPSYI NGYDQFSNNC STIIRDLVGE GTQQLSANTV AEDRAAAASN RHSEAERRRR  60
KRINGHLATL RTLLPNTIKT DKASLLAEVV RRVKELKKMA AEAEVESTSD DDDDYFISRN  120
KEYYMIPSEI DELEVTYVGE DSSMIKACMC CQDRPELMVE LRRALAVVGG KLVRTEIGTL  180
GGRIKCVLWV QIAREQGLPE LRRSLKVVMD QAAFLDLPRN KRPRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-27bHLH family protein