PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024996964.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 190aa    MW: 22347.8 Da    PI: 6.5336
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024996964.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.2e-211467356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     R +f++eq++ Le +Fe ++ p  +++++LA+klgL  rqV +WFqNrRa+ k
  XP_024996964.1 14 GRSRFSNEQIQFLEYMFETQSRPELRTKQQLANKLGLHPRQVAIWFQNRRARSK 67
                    599*************************************************99 PP
2HD-ZIP_I/II104.68.1e-3415103391
     HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     + r+s+eq+++LE +Fe++++ e + K++la++Lgl+prqva+WFqnrRAR k++q+E++y+ Lk+ y+al+ + e+L++e+++L +++
  XP_024996964.1  15 RSRFSNEQIQFLEYMFETQSRPELRTKQQLANKLGLHPRQVAIWFQNRRARSKSRQTEQEYNLLKHDYEALACKSESLKEENQSLLTQM 103
                     679*********************************************************************************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MMSAVKTRKN KDEGRSRFSN EQIQFLEYMF ETQSRPELRT KQQLANKLGL HPRQVAIWFQ  60
NRRARSKSRQ TEQEYNLLKH DYEALACKSE SLKEENQSLL TQMLRDLAKT QQGNITMRPD  120
FANKSSNENF DDKITLSMAD NSKVLSENDN QEIHVPFYGD TSYVGEDGKI IETEEHKSRS  180
DSDRPSWWEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.24e-31HD-ZIP family protein