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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_024996999.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 282aa MW: 31134.6 Da PI: 4.7012 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 60.1 | 4.7e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + + +tl+ ++++v++ ++fdfl +iv +
XP_024996999.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLQRGAKTLNSMHLKQCVQSFNVFDFLREIVGK 86
5789************************************************************************99865 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 282 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLQRGAK 60 TLNSMHLKQC VQSFNVFDFL REIVGKVPDL GGSDAAGEER SATKRRKVAD DDHNDGDEDL 120 KRDKPPETVY ANGSGRGRGR GRGRGRGRIS RAEKEANAAA ASNYEKQEGD TNKQKPILDS 180 VEDADSKENH NISATGKTED QVKIRSFDLN LDLDENGDTP AISMAPVTPS GSSLKPPTIE 240 MKPDEFPGWS LADVEKMAID PVQLANLNSR IDEDDEDYDE EG |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 136 | 145 | RGRGRGRGRG |
| 2 | 136 | 146 | RGRGRGRGRGR |
| 3 | 138 | 147 | RGRGRGRGRG |
| 4 | 138 | 148 | RGRGRGRGRGR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 1e-65 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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