PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024997061.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family WRKY
Protein Properties Length: 236aa    MW: 27349.7 Da    PI: 7.5931
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024997061.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30118177159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv+rs +d +++++tYegeHnh+
  XP_024997061.1 118 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQRSVDDAHLLVVTYEGEHNHQ 177
                     58***************************99****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MVDTSLGIDL NVTPFHKTDD TPMNDDLTRM SLENKKLREK LTTVWDKNNT LQNQVNKLMQ  60
DHDLLVNNLN KRKFVECEEG STSGRTENLH RGSLKRTNGG VTRVYRRTDD PSDKSMVVKD  120
GYQWRKYGQK VTRDNPSPRA YYKCSFAPSC PVKKKVQRSV DDAHLLVVTY EGEHNHQSME  180
KEPNQTSNRR LNSPMEMLKY DEVLVEQMAN SLRRNSDFIE DLADAISSNI LEYDLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-50WRKY family protein