PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026377270.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family ARF
Protein Properties Length: 862aa    MW: 95460.9 Da    PI: 6.8814
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026377270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23166267199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      g +++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_026377270.1 166 FCKTLTASDTSTHGGFSVLRRHADEClppldmGRQPP-TQELVAKDLHGTEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 257
                     99*****************************754544.469************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_026377270.1 258 GELRVGVRRA 267
                     99*****996 PP
2Auxin_resp1156.7e-38292374183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st+++F+v+Y+Pr+s++eF+v+++++++++k++ s+GmRfkm+fe+e+++e+r++Gt+vg  ++dp rWp SkWrsLk
  XP_026377270.1 292 AWHAVSTGTMFTVYYKPRTSPAEFIVPFDQYMESVKNNHSIGMRFKMRFEGEEAPEQRFTGTIVGNGESDPNRWPSSKWRSLK 374
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    
MAGSSSDATV KLNCNTTSRG GGGGDSMSSG GGDSMVKNTP SCETPRSYSN FTAGGKEEAL  60
YTELWHACAG PLVTVPREGE RVFYFPQGHI EQVEASTNQV ADQQMPVCDL PWKILCRVIN  120
VHLKAEPDTD EVFAQVTLLP ESNQDEHAVE KEPLPPAPPR PHSHSFCKTL TASDTSTHGG  180
FSVLRRHADE CLPPLDMGRQ PPTQELVAKD LHGTEWRFRH IFRGQPRRHL LQSGWSVFVS  240
SKRLVAGDAF IFLRGENGEL RVGVRRAMRQ QSNVPSSVIS SHSMHLGVLA TAWHAVSTGT  300
MFTVYYKPRT SPAEFIVPFD QYMESVKNNH SIGMRFKMRF EGEEAPEQRF TGTIVGNGES  360
DPNRWPSSKW RSLKVRWDEN SSIPRPDRVS PWKIEPASTP APNATPMPRP KRPRSNLVPS  420
SPESSCIGRE GSSKVMEPAS ANGFSRVLQG QETLRGTFGE SNESDTAQKP VAWPRSTEDE  480
KADMISRERV FGTENWAPPV RHEHAFTDLL SGFRSSNDSP RRFSTHLVDQ TRDNSSSKKH  540
IQDQEVKFNF AGSWSMLPSG HSVNMLDSGV KVPAQTGENS YQNQGAVKYG GLGGYPVLQS  600
LRVEQQPTNW LMPLLPPSHS GTLHHPIGVR PQVTSMQRDT LKPKSDGNCK LFGIALNSNP  660
VVPEPTGSHV NMTHTQAATM HPNPQIPHAL ESDQQSEQSK GSRSADTTPV GIEQETSIQA  720
CQQRSGDVQS LVQASSMRSC TKVHKQGIAL GRSVDLTKFN NYDDLITELD KMFEFDGELM  780
APSKNWLVVY TDNENDMMLV GDDPWKEFCS MVRKIFIYTK EEVQRMNKGT LNSKGEESTA  840
LGEEKASPIE VRCQQLPSVE NC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein