PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026377353.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 28371 Da PI: 9.0909

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026377353.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.9	2.1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nr+vtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_026377353.1 9 KRIENKINRHVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	96.2	5.3e-32	81	175	6	100
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++s+ e+ + s++qe+ kLk+++e+Lqr+qR+llGedL++Ls keL+ Le+qL++slk+iRs++++++l+q+ +lq++e++l+e+nk+Lr++lee XP_026377353.1 81 NVSARESLEHSSHQEYLKLKARVETLQRSQRNLLGEDLGPLSGKELEFLEKQLDSSLKQIRSTRTQYMLDQLTDLQRREQMLSEANKSLRRRLEE 175 4446677778999******************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MGRGRVELKR IENKINRHVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMFKTLERY QKCNYGQPET NVSARESLEH SSHQEYLKLK ARVETLQRSQ RNLLGEDLGP 120 LSGKELEFLE KQLDSSLKQI RSTRTQYMLD QLTDLQRREQ MLSEANKSLR RRLEEGAQAT 180 QQQWDMQHGV GYSRQQQSGH QAADQNETFF HPIECQPTLQ IGYHQQDQIT VAQGAPMSYM 240 PGWLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-113	MIKC_MADS family protein