PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026379679.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 702aa MW: 78277.1 Da PI: 8.6767

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026379679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	83	104	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C + F ++ n++rHir+H XP_026379679.1 83 KCDKCVREFCSPINYRRHIRLH 104 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MPAANLRSSN NLDAMMFGQN LVKADETNDS LDTFIRQAIG KEPVLPYSRA ADSPIQWIQF 60 LSSLDPQADL SGWPLYPKVP MQKCDKCVRE FCSPINYRRH IRLHRRSLKI EKDSTKIRDL 120 MGAFWDKLSM DEAKDVISFD TVMLEGVPGS AVVRALASFI RKPGFFSLPQ SYVKAGAALL 180 DLIQGRPSRF PISSTELFSI LHDASEKTFL CPGTAISMQK FMFDGEPGKI GLEMKNLIAC 240 TSFLVEQKLI KECLVEKDAE ALRCQKLLVE EEEAAQRRQF ELLERKRLKK LRQKEQKAKE 300 QVEVEDVDLK EDSSISVEVS ESTSNSHTPE LSIVRPSSTD EGCDNADNAD KAEIDMAYET 360 SNSTDPQNFD HQHVQQGNSQ QQGDGQQHGN GRQRAVANRR SRRSEPNSFR AGHVVPVSKL 420 GAIQKRGNYR DLKTTPLANK SQRVWTRKTK IENERISSNA VVQRDTRDEQ DVGGSGDLLI 480 GSIPVTLGEC STSSQIKVDQ CTSDYQPGQR NISSGSMQEK SVKIELVQSG TNKSKTKHWR 540 PVGRRERRKR EKIEFVGESS NLIDDSCIPR NNSDGCSGLE GAGSSEATKE AHSTGRKLFS 600 SHEVKAFLAQ RWKEAIASDH VKLVLSPETE LPECVENQDV QATAHIPSDS GNRSILGSAE 660 NRLAGTNGPE RAKNGNSKHA KFKAKPERGY KLKYIPKQRN SS

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MPAANLRSSN NLDAMMFGQN LVKADETNDS LDTFIRQAIG KEPVLPYSRA ADSPIQWIQF  60
LSSLDPQADL SGWPLYPKVP MQKCDKCVRE FCSPINYRRH IRLHRRSLKI EKDSTKIRDL  120
MGAFWDKLSM DEAKDVISFD TVMLEGVPGS AVVRALASFI RKPGFFSLPQ SYVKAGAALL  180
DLIQGRPSRF PISSTELFSI LHDASEKTFL CPGTAISMQK FMFDGEPGKI GLEMKNLIAC  240
TSFLVEQKLI KECLVEKDAE ALRCQKLLVE EEEAAQRRQF ELLERKRLKK LRQKEQKAKE  300
QVEVEDVDLK EDSSISVEVS ESTSNSHTPE LSIVRPSSTD EGCDNADNAD KAEIDMAYET  360
SNSTDPQNFD HQHVQQGNSQ QQGDGQQHGN GRQRAVANRR SRRSEPNSFR AGHVVPVSKL  420
GAIQKRGNYR DLKTTPLANK SQRVWTRKTK IENERISSNA VVQRDTRDEQ DVGGSGDLLI  480
GSIPVTLGEC STSSQIKVDQ CTSDYQPGQR NISSGSMQEK SVKIELVQSG TNKSKTKHWR  540
PVGRRERRKR EKIEFVGESS NLIDDSCIPR NNSDGCSGLE GAGSSEATKE AHSTGRKLFS  600
SHEVKAFLAQ RWKEAIASDH VKLVLSPETE LPECVENQDV QATAHIPSDS GNRSILGSAE  660
NRLAGTNGPE RAKNGNSKHA KFKAKPERGY KLKYIPKQRN SS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	291	ERKRLKKL
2	544	551	RRERRKRE
3	547	552	RRKREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	6e-94	C2H2 family protein