PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026380918.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

CO-like

Protein Properties

Length: 484aa MW: 53835.6 Da PI: 5.287

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026380918.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.2	1.7e-08	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k+++++C+ ++ +lC+ C + H+ H++v XP_026380918.1 17 ARACDSCMCKRARWYCTADDAFLCQACDASVHSAnslarrHERV 60 578*****************************657788888876 PP
2	CCT	67.9	2.6e-23	426	469	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_026380918.1 426 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 469 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MNSTEKKAAN AVGGKTARAC DSCMCKRARW YCTADDAFLC QACDASVHSA NSLARRHERV 60 RLKTASMKPT SNTNGRSNNN KNLVVEINSS LPTWHQGFRR KARTPRHGKP MSQQQQHQQA 120 PKAEEEPIDH LLMMNNNVNS NLPLVPELGS DETSPDENEE QLLYRVPIFD PFVEEFCSSV 180 MSNEVVATPT NNTNEVGTNI GNINSSKIQL QEYEHVASDH YESLSGLNLP SDLDLTEFAA 240 DVETLLGRGL DEDSYGMEGL GLLESKEEDY CCFGSNGRVK EEEDDEELET SVACHMDTEF 300 DLSRETLDLN FDYESPTTGE EEEDMKVVHN PIAPMMMNDG VHNKVVETPK AIPLRLNYEA 360 VISAWAAQGS PWTTGGRPPS NHDDYWPEYL GTSRNTEVHH HGYGDVGGGG AAGGGHAGMS 420 GGDGGREARV SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRTS SSFMANSVGT 480 DLSF

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MNSTEKKAAN AVGGKTARAC DSCMCKRARW YCTADDAFLC QACDASVHSA NSLARRHERV  60
RLKTASMKPT SNTNGRSNNN KNLVVEINSS LPTWHQGFRR KARTPRHGKP MSQQQQHQQA  120
PKAEEEPIDH LLMMNNNVNS NLPLVPELGS DETSPDENEE QLLYRVPIFD PFVEEFCSSV  180
MSNEVVATPT NNTNEVGTNI GNINSSKIQL QEYEHVASDH YESLSGLNLP SDLDLTEFAA  240
DVETLLGRGL DEDSYGMEGL GLLESKEEDY CCFGSNGRVK EEEDDEELET SVACHMDTEF  300
DLSRETLDLN FDYESPTTGE EEEDMKVVHN PIAPMMMNDG VHNKVVETPK AIPLRLNYEA  360
VISAWAAQGS PWTTGGRPPS NHDDYWPEYL GTSRNTEVHH HGYGDVGGGG AAGGGHAGMS  420
GGDGGREARV SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRTS SSFMANSVGT  480
DLSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	437	453	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-91	CO-like family protein