PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026384228.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 186aa    MW: 21262.3 Da    PI: 6.1305
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026384228.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.32e-131053346
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    i n+  r  tf kRr  +lKK +E+S LCd++++ i++ +++ l
  XP_026384228.1 10 IPNSAARRATFKKRRMDLLKKVSEISNLCDVDACAIVYEPDNPL 53
                    78999*********************************999866 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MARPKKVAYI PNSAARRATF KKRRMDLLKK VSEISNLCDV DACAIVYEPD NPLPKVWPAN  60
PEAHRVLMRF KGLPERDQLD NDQESSEENQ MGMTTERSIN QQLEDHYMKL RRMFNRALDG  120
ESSIPEPDIH PVDLIDFAWL LDEKHKEVIL KLLNLQKATA ISGSEGNTIV IPSPSYSVDT  180
NVNWCT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-23M-type_MADS family protein