PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026385608.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family ARF
Protein Properties Length: 856aa    MW: 95146.5 Da    PI: 7.1264
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026385608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23168269199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      g +++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_026385608.1 168 FCKTLTASDTSTHGGFSVLRRHADEClppldmGRQPP-TQELVAKDLHGTEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 259
                     99*****************************754544.469************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_026385608.1 260 GELRVGVRRA 269
                     99*****996 PP
2Auxin_resp115.35.4e-38294376183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st+++F+v+Y+Pr+s++eF+v+++++++++k++ s+GmRfkm+fe+e+++e+r++Gt+vg  ++dp rWp SkWrsLk
  XP_026385608.1 294 AWHAISTGTMFTVYYKPRTSPAEFIVPFDQYMESVKNNHSIGMRFKMRFEGEEAPEQRFTGTIVGNGESDPNRWPSSKWRSLK 376
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    
MAGSSSDATV KLNCNTTSRG GGGGDSMSSG GGDSMVKNTP NCETPRSYSN FTAGGKVTEE  60
ALYTELWHAC AGPLVTVPRE GERVFYFPQG HIEQVEASTN QVADQQMPVC DLPWKILCRV  120
INVHLKAEPD TDEVFAQVTL LPESNQDEHA VEKEPLPPAP PRPHSHSFCK TLTASDTSTH  180
GGFSVLRRHA DECLPPLDMG RQPPTQELVA KDLHGTEWRF RHIFRGQPRR HLLQSGWSVF  240
VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQQSNVPSSV ISSHSMHLGV LATAWHAIST  300
GTMFTVYYKP RTSPAEFIVP FDQYMESVKN NHSIGMRFKM RFEGEEAPEQ RFTGTIVGNG  360
ESDPNRWPSS KWRSLKVRWD ENSSIPRPDR VSPWKIEPAS TPAPNTTPMP RPKRPRSNLV  420
PSSPESSCIG REGSSKVMEP ASGFSRVLQG QETSRGTFGE SNESDTAQKP VAWPRSTEDE  480
KADMISRERV FGTENWVPPV RHEHTFTDLL SGFRSSNDSP RRFSSHLVDQ TRDISSSKKH  540
IQDQEVKFNY AGSWSMLPSG HSVNMLDSGV KVPAQTGENS YQKQGTVKYG GLGGYPVLQS  600
LRVEQQPTNW LMPLLPPSHS GTLHHPIGVR PQVSSMQRDT LKPKSDGNCK LFGIALNSNP  660
VVPEPTGSHV NMTHTQEATL HPNPQIPHAL ESDQQSEQSK GSRSADTTPV GTEQETSIQA  720
CQQRSGDVQS RVQASSMRSC TKVHKQGIAL GRSVDLTKFN NYDDLITELD KMFEFDGELM  780
APSKNWLVVY TDNENDMMLV GDDPWKEFCS MVRKIFIYTK EEVQRMNKGT LNSKGEESHR  840
SPIEVKCQQL PSVENC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein