PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026386407.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 574aa MW: 64391.1 Da PI: 7.6423

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026386407.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	86	108	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cgk F ++ +++H+++ H XP_026386407.1 86 TCKECGKGFQSWKAYTSHLKSfH 108 6*******************988 PP
2	zf-C2H2	11	0.0013	407	429	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F++ L H +H XP_026386407.1 407 YKCTTCNKYFPSYQALGGHRASH 429 9***********99999998887 PP
3	zf-C2H2	12.4	0.00047	487	509	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+Fs+ L H r+H XP_026386407.1 487 HECPICFKVFSSGQALGGHKRSH 509 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MDEDHEFKHV CKYCKKRFPC GRSLGGHMRS HMNTSTEIEE VNNTFMVGYD QNGTAHTGYG 60 LRENPKKTWR SVSDSTKRGN FIGDNTCKEC GKGFQSWKAY TSHLKSFHSQ MYDEKSLSIV 120 VYGGGGKEVE QVEDEEEEDY WSDRELEENQ NLVMDSQSDN EATAPKRRRS KRTRYKNTNT 180 IITPSTNNNH NNTTSCLSVE NSSVSEISNE QEEVAMSLMM LSRDSSGYSR SELNCLVESS 240 DNNSLFLEAK SSSLTKRASE NELNNVNLNE KKKLKGKKKL GVTRFDGKRS ELGGCYGSGF 300 SRNGELEVSA SFGEEGEFKR PKFDDELENS SYTRNRVNSK SARAELGKNL IREGENQSSF 360 KYGKFNSSKR AKSDLYEDEF DRVSRKKAKY DGSDSEFCKS SSKKSKYKCT TCNKYFPSYQ 420 ALGGHRASHK KIKGCSASKV DFSETSFETD LSPDPTADIK SCNNDNVSVF EVTASAETSP 480 ALKKNKHECP ICFKVFSSGQ ALGGHKRSHL VGGSDTRSTP TIVLPQKLPV MRDLLDLNLP 540 APNDEETNTG DMGYEPWWVG NSHKHDQLVG LISN

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MDEDHEFKHV CKYCKKRFPC GRSLGGHMRS HMNTSTEIEE VNNTFMVGYD QNGTAHTGYG  60
LRENPKKTWR SVSDSTKRGN FIGDNTCKEC GKGFQSWKAY TSHLKSFHSQ MYDEKSLSIV  120
VYGGGGKEVE QVEDEEEEDY WSDRELEENQ NLVMDSQSDN EATAPKRRRS KRTRYKNTNT  180
IITPSTNNNH NNTTSCLSVE NSSVSEISNE QEEVAMSLMM LSRDSSGYSR SELNCLVESS  240
DNNSLFLEAK SSSLTKRASE NELNNVNLNE KKKLKGKKKL GVTRFDGKRS ELGGCYGSGF  300
SRNGELEVSA SFGEEGEFKR PKFDDELENS SYTRNRVNSK SARAELGKNL IREGENQSSF  360
KYGKFNSSKR AKSDLYEDEF DRVSRKKAKY DGSDSEFCKS SSKKSKYKCT TCNKYFPSYQ  420
ALGGHRASHK KIKGCSASKV DFSETSFETD LSPDPTADIK SCNNDNVSVF EVTASAETSP  480
ALKKNKHECP ICFKVFSSGQ ALGGHKRSHL VGGSDTRSTP TIVLPQKLPV MRDLLDLNLP  540
APNDEETNTG DMGYEPWWVG NSHKHDQLVG LISN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	172	PKRRRSKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	3e-28	C2H2 family protein