PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026386597.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

CO-like

Protein Properties

Length: 369aa MW: 41135 Da PI: 5.4641

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026386597.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.5	2.8e-08	63	107	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e ++++ C+ + lC +C ++H+ H++vp+ XP_026386597.1 63 LVCEACECAPASFSCKADAAALCVNCDAKIHSAnalarrHQRVPI 107 68***************************668999999997 PP
2	CCT	70.7	3.6e-24	300	343	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_026386597.1 300 REARVLRYREKRKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 343 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MMSEGSKMLK EAVGAGGWTR VCDSCRAAAC TVYCQADLAY LCIGCDTCIH AVNSGAWMHE 60 RVLVCEACEC APASFSCKAD AAALCVNCDA KIHSANALAR RHQRVPILPI TGILDGPSAT 120 HRSRRYGPKI HVDDVFLAQK TEEDEDQEDE TSSWLLLNPV KSKNQSNNNN NGFVFGNEVE 180 EYLDLDEYNS CTETSQYYVN DSVVPVQCVT VKQQEQELPQ HLQQNFQIEM DFEASKSGFN 240 YSNTSISHSV SMSSMDTNIV PDSINLNEVS NSNGCSSKGT IDLFANPPVQ MPTQFSSSDR 300 EARVLRYREK RKTRKFEKTI RYASRKAYAE TRPRIKGRFA KRTDAEFEVD QMFSSSVMSE 360 NGYGVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MMSEGSKMLK EAVGAGGWTR VCDSCRAAAC TVYCQADLAY LCIGCDTCIH AVNSGAWMHE  60
RVLVCEACEC APASFSCKAD AAALCVNCDA KIHSANALAR RHQRVPILPI TGILDGPSAT  120
HRSRRYGPKI HVDDVFLAQK TEEDEDQEDE TSSWLLLNPV KSKNQSNNNN NGFVFGNEVE  180
EYLDLDEYNS CTETSQYYVN DSVVPVQCVT VKQQEQELPQ HLQQNFQIEM DFEASKSGFN  240
YSNTSISHSV SMSSMDTNIV PDSINLNEVS NSNGCSSKGT IDLFANPPVQ MPTQFSSSDR  300
EARVLRYREK RKTRKFEKTI RYASRKAYAE TRPRIKGRFA KRTDAEFEVD QMFSSSVMSE  360
NGYGVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	5e-82	CO-like family protein