PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026386662.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

CO-like

Protein Properties

Length: 484aa MW: 53766.4 Da PI: 5.202

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026386662.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.2	1.7e-08	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k+++++C+ ++ +lC+ C + H+ H++v XP_026386662.1 17 ARACDSCMCKRARWYCTADDAFLCQACDASVHSAnslarrHERV 60 578*****************************657788888876 PP
2	CCT	67.9	2.6e-23	426	469	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_026386662.1 426 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 469 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MNSTDKKAAN AVGGKTARAC DSCMCKRARW YCTADDAFLC QACDASVHSA NSLARRHERV 60 RLKTASMKPT GNTNGRSNNN KNLVVEINSS LPTWHQGFRR KARTPRHGKP MSQQQQHQQA 120 PKAEEEPIDH LLMMNDNANS NLPLVPELGS DETSPDENEE QLLYRVPIFD PFVEEFCSSV 180 MSNEVVATPT NNTNEVGTNI GNINSSKIQL QEYEHVASEH YESLSGLNLP SDLDLTEFAA 240 DVETLLGRGL DEDSYGMEGL GLLESKEEDY CCFGSNGRVK EEEDDEELET SVACHMDTEF 300 DLSRETLDLN FDYESPTTGE EEEDMKVVHN PIAPMMMNDG VHNKVVETPK AISLRLNYEA 360 VISAWAAQGS PWTTGGRPPS NHDDYWPEYL GTSRNAEVHH HGYGDVGGGG AAGGGHVGMS 420 GGDGGREARV SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRTS SSFMANSVGT 480 DLSF

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MNSTDKKAAN AVGGKTARAC DSCMCKRARW YCTADDAFLC QACDASVHSA NSLARRHERV  60
RLKTASMKPT GNTNGRSNNN KNLVVEINSS LPTWHQGFRR KARTPRHGKP MSQQQQHQQA  120
PKAEEEPIDH LLMMNDNANS NLPLVPELGS DETSPDENEE QLLYRVPIFD PFVEEFCSSV  180
MSNEVVATPT NNTNEVGTNI GNINSSKIQL QEYEHVASEH YESLSGLNLP SDLDLTEFAA  240
DVETLLGRGL DEDSYGMEGL GLLESKEEDY CCFGSNGRVK EEEDDEELET SVACHMDTEF  300
DLSRETLDLN FDYESPTTGE EEEDMKVVHN PIAPMMMNDG VHNKVVETPK AISLRLNYEA  360
VISAWAAQGS PWTTGGRPPS NHDDYWPEYL GTSRNAEVHH HGYGDVGGGG AAGGGHVGMS  420
GGDGGREARV SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRTS SSFMANSVGT  480
DLSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	437	453	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	8e-93	CO-like family protein