PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026387065.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 476aa MW: 53118.5 Da PI: 7.8102

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026387065.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.3	7.1e-10	76	101	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f rtG C+yG +C+++H+ XP_026387065.1 76 PGEADCAHFVRTGSCRYGLKCRYNHP 101 57899********************9 PP
2	zf-CCCH	33.8	5.8e-11	162	187	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C+yG +C+++H+ XP_026387065.1 162 PGEPDCGHYLRTGACRYGLNCRYNHP 187 5789*********************8 PP
3	zf-CCCH	31.4	3.1e-10	202	227	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r G CkyG +C+F H XP_026387065.1 202 PGQVECKYYLRPGGCKYGTTCRFQHI 227 5789*********************5 PP
4	zf-CCCH	23.3	1.2e-07	249	273	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C++++r+G Ck+ +C+++H+ XP_026387065.1 249 GETECPHYMRNGSCKFALNCRCHHP 273 7789********************8 PP
5	zf-CCCH	24.7	4e-08	397	422	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +f+++G Ck+ + CkF H++ XP_026387065.1 397 GEKECEYFMKNGDCKFKSYCKFDHPK 422 7899********************96 PP
6	zf-CCCH	32.9	1.1e-10	443	465	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++r+G+Ck+G+ C++ H+p XP_026387065.1 443 ACSYYSRYGICKFGPACRYDHPP 465 6********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MVSIKELEDG DERLVFGSDS STSETAAAAA VDVSVDDSSL EGKFDNLGLG IKGKVSSFQR 60 PHDDENHNQN NHPVRPGEAD CAHFVRTGSC RYGLKCRYNH PTRNKKVQVG KGKDKETEGF 120 KERQWQLNRG FERKRSQSWG DSAIEEEEEA EVNGSLHHPV RPGEPDCGHY LRTGACRYGL 180 NCRYNHPSRS KRQEKEGYEE TPGQVECKYY LRPGGCKYGT TCRFQHIQEK PAVASTLDLN 240 FLGLPVRPGE TECPHYMRNG SCKFALNCRC HHPNPTDVGV RDPHLRYQNC RPSPVPSSVL 300 SQPGVPSWSM ARTSNETMVS YMDAAPSYAP LLSAPQGAHP SMEWNGYLPP QQNPMYPPAV 360 NMGPPVPLVL NGPSKKTGGF AHYQQQMPID EYPERPGEKE CEYFMKNGDC KFKSYCKFDH 420 PKNRASKCVL SPMGLPLRPE EIACSYYSRY GICKFGPACR YDHPPNSGSS ISGVVG

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MVSIKELEDG DERLVFGSDS STSETAAAAA VDVSVDDSSL EGKFDNLGLG IKGKVSSFQR  60
PHDDENHNQN NHPVRPGEAD CAHFVRTGSC RYGLKCRYNH PTRNKKVQVG KGKDKETEGF  120
KERQWQLNRG FERKRSQSWG DSAIEEEEEA EVNGSLHHPV RPGEPDCGHY LRTGACRYGL  180
NCRYNHPSRS KRQEKEGYEE TPGQVECKYY LRPGGCKYGT TCRFQHIQEK PAVASTLDLN  240
FLGLPVRPGE TECPHYMRNG SCKFALNCRC HHPNPTDVGV RDPHLRYQNC RPSPVPSSVL  300
SQPGVPSWSM ARTSNETMVS YMDAAPSYAP LLSAPQGAHP SMEWNGYLPP QQNPMYPPAV  360
NMGPPVPLVL NGPSKKTGGF AHYQQQMPID EYPERPGEKE CEYFMKNGDC KFKSYCKFDH  420
PKNRASKCVL SPMGLPLRPE EIACSYYSRY GICKFGPACR YDHPPNSGSS ISGVVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-85	C3H family protein