PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026388738.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

CO-like

Protein Properties

Length: 435aa MW: 47444.8 Da PI: 5.8764

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026388738.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.3	1.6e-08	21	61	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ +++ + lfC+ ++ +lC +C +++H+ H+ XP_026388738.1 21 KLCDSCKSATALLFCRADSAFLCMTCDSNIHSAnklasrHE 61 68*****************************6566777776 PP
2	zf-B_box	27.1	8.6e-09	63	108	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ XP_026388738.1 63 VWMCEVCESAPASVTCKADAASLCVTCDADIHSAnplarrHERVPV 108 689*****************************66899999999986 PP
3	CCT	69.4	9.2e-24	356	399	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_026388738.1 356 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 399 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MGIQVETRRS AGGGNWSMNT KLCDSCKSAT ALLFCRADSA FLCMTCDSNI HSANKLASRH 60 ERVWMCEVCE SAPASVTCKA DAASLCVTCD ADIHSANPLA RRHERVPVVP FFESAISAAA 120 SAGNNKISSD LNFLLVPDHF VKGQPNEVVE EDEDDVVDVK TNIHHKADDG DASWLFQNPP 180 SSKLGVVVEA VPDLMLKSGI GVGGVDYLFS DVDSYLDLDY PDIGGEKQFQ NQNGSAGSDS 240 VVPVATNPIQ NHPAASFNCS ENHCYEFDFS KPKPAYSFST QSVSHSVSSS EVGVVPDSSN 300 CNSMTDISNP FSRKNGMIID HHHGVMSTSN GMIDTNTVSN GVENAVVVTQ LTGLDREARV 360 LRYREKRKNR KFEKTIRYAS RKAYAETRPR IKGRFAKRTE TEIEADNQME RMYHSNNPSS 420 GGFVIDSGYG IVPSF

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MGIQVETRRS AGGGNWSMNT KLCDSCKSAT ALLFCRADSA FLCMTCDSNI HSANKLASRH  60
ERVWMCEVCE SAPASVTCKA DAASLCVTCD ADIHSANPLA RRHERVPVVP FFESAISAAA  120
SAGNNKISSD LNFLLVPDHF VKGQPNEVVE EDEDDVVDVK TNIHHKADDG DASWLFQNPP  180
SSKLGVVVEA VPDLMLKSGI GVGGVDYLFS DVDSYLDLDY PDIGGEKQFQ NQNGSAGSDS  240
VVPVATNPIQ NHPAASFNCS ENHCYEFDFS KPKPAYSFST QSVSHSVSSS EVGVVPDSSN  300
CNSMTDISNP FSRKNGMIID HHHGVMSTSN GMIDTNTVSN GVENAVVVTQ LTGLDREARV  360
LRYREKRKNR KFEKTIRYAS RKAYAETRPR IKGRFAKRTE TEIEADNQME RMYHSNNPSS  420
GGFVIDSGYG IVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	4e-91	CO-like family protein