PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026389409.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

Whirly

Protein Properties

Length: 245aa MW: 27207.1 Da PI: 10.0264

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026389409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	173.1	6.1e-54	61	199	2	139
Whirly 2 vyktkaalkvkavrptfealdsg.nlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 ++k+k+al++ ++ p+f +l+sg +k++r+G+++l++ +a++++kydW+++q fals+te++ l++l++ es+effhdp++++sn+G+vrk l+ XP_026389409.1 61 IFKGKGALNMSPIPPKFIQLQSGgGMKIDRKGAMMLNFFPAVGPKKYDWQNRQGFALSVTEIGALISLGPSESAEFFHDPSMQSSNAGQVRKKLS 155 9****************9875279***************************************************************** PP Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 v+P+ +G+G+ ++l+v+ns+ k+ ++f+vPvskaef v+rs ++ XP_026389409.1 156 VQPIGNGAGFSFSLNVNNSVSKTSDQFYVPVSKAEFEVMRSSFN 199 **************************************9885 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MLKKFSQVLT VRRPLSKFLL PRKVSNTEDA LLSRSFVSQA VARPNPASDG DSGRVFVDYT 60 IFKGKGALNM SPIPPKFIQL QSGGGMKIDR KGAMMLNFFP AVGPKKYDWQ NRQGFALSVT 120 EIGALISLGP SESAEFFHDP SMQSSNAGQV RKKLSVQPIG NGAGFSFSLN VNNSVSKTSD 180 QFYVPVSKAE FEVMRSSFNY ILPRIMGWDQ LFNPQLPASA NVNPEIREPE MEPEMHLSPD 240 PEWDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	5e-64	Whirly family protein