PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026390541.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MYB

Protein Properties

Length: 361aa MW: 41621.7 Da PI: 9.9895

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026390541.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3.2e-15	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd+ll +++ ++G g W+ ++ + g++R++k+c++rw++yl XP_026390541.1 15 KGAWAEEEDQLLRKCILKYGEGKWRQVPIRAGLNRCRKSCRLRWLNYL 62 799*******************************************97 PP
2	Myb_DNA-binding	44.4	3.8e-14	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + ++E +l+++ +k+lG++ W++Ia +++ gRt++++k++++++l XP_026390541.1 68 RGEFKEDEVDLIIRMHKLLGNR-WSLIAGRLP-GRTANDIKNYYNTHL 113 8999****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MESSSIVSSE KGLRKGAWAE EEDQLLRKCI LKYGEGKWRQ VPIRAGLNRC RKSCRLRWLN 60 YLQPNIKRGE FKEDEVDLII RMHKLLGNRW SLIAGRLPGR TANDIKNYYN THLKKTCFSR 120 NNTEKGKQVA VTKKSAGHDN TAYRDGQDHE HRKILKRRRL SPNISTIDHI DDKHMRTEVL 180 RPQPRTFKKS QWNMNNVPTT TTGVNNNITT TTTRFPKNSQ VVSKNATNCL PLLFDDLFSN 240 DQQINDNSTS WLKNMLFGET EEEENSTTKK KKKKPKKKKR VTSNNNASSK FESNTAKGVE 300 EGIAKDKDGG SDNQHAYYCS FNDGKGLEEG GAGNNDNFWN NYLDDNLWHM LGEEQEEYLM 360 I

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MESSSIVSSE KGLRKGAWAE EEDQLLRKCI LKYGEGKWRQ VPIRAGLNRC RKSCRLRWLN  60
YLQPNIKRGE FKEDEVDLII RMHKLLGNRW SLIAGRLPGR TANDIKNYYN THLKKTCFSR  120
NNTEKGKQVA VTKKSAGHDN TAYRDGQDHE HRKILKRRRL SPNISTIDHI DDKHMRTEVL  180
RPQPRTFKKS QWNMNNVPTT TTGVNNNITT TTTRFPKNSQ VVSKNATNCL PLLFDDLFSN  240
DQQINDNSTS WLKNMLFGET EEEENSTTKK KKKKPKKKKR VTSNNNASSK FESNTAKGVE  300
EGIAKDKDGG SDNQHAYYCS FNDGKGLEEG GAGNNDNFWN NYLDDNLWHM LGEEQEEYLM  360
I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	160	KRRRL
2	269	277	KKKKKKPKK
3	269	279	KKKKKKPKKKK
4	270	280	KKKKKKPKKKK
5	277	307	KKKRVTSNNNASSKFESNTAKGVEEGIAKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	2e-59	MYB family protein