PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026390543.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 180aa MW: 20478.6 Da PI: 9.457

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026390543.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.2	4.6e-11	65	106	56	99
TTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 56 sgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++r++l++GW+ Fv+++ L +gD ++F + +++el+v+v+r+ XP_026390543.1 65 PRRHLLQSGWSVFVSSKTLVVGDAFIFL--RGENGELRVGVCRA 106 689***********************..449999****97 PP
2	Auxin_resp	64.3	4.5e-22	131	180	1	50
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafe 50 a+ha+st+++F+v+Y+Pr+s+ eF+v++ ++++++k++ s+GmRfkm+fe XP_026390543.1 131 AWHAVSTETMFTVYYKPRTSPEEFIVPYGQYMESVKNSHSIGMRFKMRFE 180 89***********************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
MPIYDLPAKI LFRVINVQLK AKADTDEVFA QVTLLPQGNQ DENLMEKENV PQSSPRPLVH 60 SFCQPRRHLL QSGWSVFVSS KTLVVGDAFI FLRGENGELR VGVCRAKRQQ GNILSSFISS 120 HSMHLGVLAT AWHAVSTETM FTVYYKPRTS PEEFIVPYGQ YMESVKNSHS IGMRFKMRFE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	7e-88	ARF family protein