PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026392030.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 28909.7 Da    PI: 9.0025
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026392030.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.92.1e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  XP_026392030.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 58
                    79***********************************************8 PP
2K-box112.93.2e-3782174999
           K-box   9 leeakaeslqqelakLkkeienLq..reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++ea+++ +qqe++kL+++i  Lq  +++Rhl+Ge L+s+s+keL+qLe +Lek++++iRskKnell+++ie++qk+e +lq++n++Lr+k++
  XP_026392030.1  82 ASEANTQFYQQEATKLRQQIGILQnsNSLRHLMGEALSSMSVKELKQLEGRLEKGISRIRSKKNELLFAEIEYMQKRELDLQNDNMYLRAKIA 174
                     7899********************99899**************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSN RGRLYEYANN  60
SVKSTIDRYK KTCADPSSTI CASEANTQFY QQEATKLRQQ IGILQNSNSL RHLMGEALSS  120
MSVKELKQLE GRLEKGISRI RSKKNELLFA EIEYMQKREL DLQNDNMYLR AKIADNERAG  180
QQMNLMPGNE YDVMTSSAYD SRNFLQVNNL LESANHHYSR QEQTALQLGA KIEDIKPLQY  240
SSYGFGGEEA YGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-109MIKC_MADS family protein