PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026393658.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25844.2 Da    PI: 9.482
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026393658.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.41.8e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien +nrqvt+skRr gilKKA+EL vLCdaev++i+fsstgk+ ey 
  XP_026393658.1  9 KRIENATNRQVTYSKRRSGILKKAKELTVLCDAEVSLIMFSSTGKMTEYL 58
                    79**********************************************96 PP
2K-box92.47.6e-3173171199
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq+ sg+sl++a++eslq+ l+k k+ ++ L+re+R+++GedL++L++ eL++Le +Le s+k +R++K++++++q+e+++kk +++ e+++ L 
  XP_026393658.1  73 YQQISGSSLWNAHYESLQNALNKQKEINRRLRREIRQRMGEDLDELTIDELRNLEANLEASVKVVRDRKYHVIITQTETTRKKLRNHTEQHHGLL 167
                     8999******************************************************************************************9 PP

           K-box  96 kkle 99 
                     +++e
  XP_026393658.1 168 REFE 171
                     9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MGRGKIEIKR IENATNRQVT YSKRRSGILK KAKELTVLCD AEVSLIMFSS TGKMTEYLSP  60
SLNGNTKRVY DRYQQISGSS LWNAHYESLQ NALNKQKEIN RRLRREIRQR MGEDLDELTI  120
DELRNLEANL EASVKVVRDR KYHVIITQTE TTRKKLRNHT EQHHGLLREF EPIDEDPRFI  180
LAVEEEDYES AIELANGQNI FTFRLQPSQP NLHNGGGYLR LA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.19e-56MIKC_MADS family protein