PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026394305.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 252aa MW: 29587.6 Da PI: 9.5507

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026394305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.1	2.3e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien +nrqvt+skRr gilKKA+EL vLCdaev++i+fsstgk+ ey XP_026394305.1 9 KRIENATNRQVTYSKRRSGILKKAKELTVLCDAEVSLIMFSSTGKMTEYL 58 79**********************************************96 PP
2	K-box	14.9	1.1e-06	73	108	1	36
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqR 36 yq+ sg+sl+++++eslq+ l+k k+ ++ L+re+R XP_026394305.1 73 YQQISGSSLWNSHYESLQNALNKQKEINKRLRREIR 108 8999******************************99 PP
3	K-box	64.9	2.8e-22	134	197	36	99
K-box 36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 R+++GedL++L++ eL++Le +Le s+k +R++K++++++q+e+++kk +++ e+++ L +++e XP_026394305.1 134 RQRMGEDLDELTIDELRNLEANLEASVKVVRDRKYHVIITQTETTRKKLRNHTEQHHGLLREFE 197 9**********************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MGRGKIEIKR IENATNRQVT YSKRRSGILK KAKELTVLCD AEVSLIMFSS TGKMTEYLSP 60 SLNGNTKRVY DRYQQISGSS LWNSHYESLQ NALNKQKEIN KRLRREIRYQ EARSIFYVHC 120 IVKKLIIFSF WIYRQRMGED LDELTIDELR NLEANLEASV KVVRDRKYHV IITQTETTRK 180 KLRNHTEQHH GLLREFEPID EDPRFILAGQ EEDYESAIEL ANGQNIFTFR LQPSQPNLHN 240 GGGYHCHDLR LA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	4e-56	MIKC_MADS family protein