PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026395057.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 503aa MW: 54507.1 Da PI: 8.1231

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026395057.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.9	2.3e-10	90	114	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C +++ t tC++Gd+CkF H+ XP_026395057.1 90 GETDCAHYMLTRTCRFGDTCKFDHP 114 6789********************8 PP
2	zf-CCCH	25.9	1.7e-08	141	167	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t C++G +CkF+H++ XP_026395057.1 141 PGEPACPYFLKTKKCRFGFKCKFNHPK 167 57899********************96 PP
3	zf-CCCH	40.7	3.9e-13	187	210	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f+++tG+Ck+G++CkF+H++ XP_026395057.1 187 PPCSFYMKTGICKFGESCKFHHPK 210 89********************96 PP
4	zf-CCCH	38.4	2e-12	261	287	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG CkyG++C+++H++ XP_026395057.1 261 PGEVDCPFYLKTGSCKYGATCRYSHPE 287 57899********************96 PP
5	zf-CCCH	37.9	3e-12	347	371	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C f+++tG Ck+G+rCk++H+ XP_026395057.1 347 GQTECEFYMKTGDCKFGERCKYHHP 371 6789********************8 PP
6	zf-CCCH	41.4	2.3e-13	400	423	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tG CkyG++C+F H+p XP_026395057.1 400 VVCPFYMKTGACKYGSSCRFDHPP 423 67********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MHMMNHHDRY RFPSISQQSL WPPGVDASSS FSPCFAGTKR TSSEALYHQT YLGTSNTFGQ 60 SEAFYSANNL SKRPRFESTS HLPIYPQRPG ETDCAHYMLT RTCRFGDTCK FDHPIWVPEG 120 GIPDWKEVPL VPLGDTLPER PGEPACPYFL KTKKCRFGFK CKFNHPKDIT KSVIVDLSLL 180 PERPYAPPCS FYMKTGICKF GESCKFHHPK DIQIPVTGQE NGCAEHDASV GSFDSIMSVK 240 PPFVPFTPAS LHNTKGLPVR PGEVDCPFYL KTGSCKYGAT CRYSHPERAV ISISVAPGLG 300 HAMMTSSASS MNVGLINPAA MVLPTIDPRL GQATLGLGVA VYPQRPGQTE CEFYMKTGDC 360 KFGERCKYHH PIDRTAATQS MPKQDVKLTL AGLPRREGAV VCPFYMKTGA CKYGSSCRFD 420 HPPPGEAVAM ATVVQGSSSA PLSGKAVAMA TTVQGSSSAP PLGEAVAMPT VTQGSSFAAE 480 DGESNNNNNT IVPEVAISFG STS

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MHMMNHHDRY RFPSISQQSL WPPGVDASSS FSPCFAGTKR TSSEALYHQT YLGTSNTFGQ  60
SEAFYSANNL SKRPRFESTS HLPIYPQRPG ETDCAHYMLT RTCRFGDTCK FDHPIWVPEG  120
GIPDWKEVPL VPLGDTLPER PGEPACPYFL KTKKCRFGFK CKFNHPKDIT KSVIVDLSLL  180
PERPYAPPCS FYMKTGICKF GESCKFHHPK DIQIPVTGQE NGCAEHDASV GSFDSIMSVK  240
PPFVPFTPAS LHNTKGLPVR PGEVDCPFYL KTGSCKYGAT CRYSHPERAV ISISVAPGLG  300
HAMMTSSASS MNVGLINPAA MVLPTIDPRL GQATLGLGVA VYPQRPGQTE CEFYMKTGDC  360
KFGERCKYHH PIDRTAATQS MPKQDVKLTL AGLPRREGAV VCPFYMKTGA CKYGSSCRFD  420
HPPPGEAVAM ATVVQGSSSA PLSGKAVAMA TTVQGSSSAP PLGEAVAMPT VTQGSSFAAE  480
DGESNNNNNT IVPEVAISFG STS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein