PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026395058.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 496aa MW: 53529.4 Da PI: 8.1466

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026395058.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.9	2.3e-10	79	103	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C +++ t tC++Gd+CkF H+ XP_026395058.1 79 GETDCAHYMLTRTCRFGDTCKFDHP 103 6789********************8 PP
2	zf-CCCH	25.9	1.7e-08	130	156	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t C++G +CkF+H++ XP_026395058.1 130 PGEPACPYFLKTKKCRFGFKCKFNHPK 156 57899********************96 PP
3	zf-CCCH	40.7	3.8e-13	180	203	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f+++tG+Ck+G++CkF+H++ XP_026395058.1 180 PPCSFYMKTGICKFGESCKFHHPK 203 89********************96 PP
4	zf-CCCH	38.5	2e-12	254	280	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG CkyG++C+++H++ XP_026395058.1 254 PGEVDCPFYLKTGSCKYGATCRYSHPE 280 57899********************96 PP
5	zf-CCCH	37.9	2.9e-12	340	364	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C f+++tG Ck+G+rCk++H+ XP_026395058.1 340 GQTECEFYMKTGDCKFGERCKYHHP 364 6789********************8 PP
6	zf-CCCH	41.5	2.3e-13	393	416	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tG CkyG++C+F H+p XP_026395058.1 393 VVCPFYMKTGACKYGSSCRFDHPP 416 67********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MTDIGFLQFH NSPYGHLVLT RLLLSALVLL VLSVLLPKTY LGTSNTFGQS EAFYSANNLS 60 KRPRFESTSH LPIYPQRPGE TDCAHYMLTR TCRFGDTCKF DHPIWVPEGG IPDWKEVPLV 120 PLGDTLPERP GEPACPYFLK TKKCRFGFKC KFNHPKDITK SVDASKIVDL SLLPERPYAP 180 PCSFYMKTGI CKFGESCKFH HPKDIQIPVT GQENGCAEHD ASVGSFDSIM SVKPPFVPFT 240 PASLHNTKGL PVRPGEVDCP FYLKTGSCKY GATCRYSHPE RAVISISVAP GLGHAMMTSS 300 ASSMNVGLIN PAAMVLPTID PRLGQATLGL GVAVYPQRPG QTECEFYMKT GDCKFGERCK 360 YHHPIDRTAA TQSMPKQDVK LTLAGLPRRE GAVVCPFYMK TGACKYGSSC RFDHPPPGEA 420 VAMATVVQGS SSAPLSGKAV AMATTVQGSS SAPPLGEAVA MPTVTQGSSF AAEDGESNNN 480 NNTIVPEVAI SFGSTS

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MTDIGFLQFH NSPYGHLVLT RLLLSALVLL VLSVLLPKTY LGTSNTFGQS EAFYSANNLS  60
KRPRFESTSH LPIYPQRPGE TDCAHYMLTR TCRFGDTCKF DHPIWVPEGG IPDWKEVPLV  120
PLGDTLPERP GEPACPYFLK TKKCRFGFKC KFNHPKDITK SVDASKIVDL SLLPERPYAP  180
PCSFYMKTGI CKFGESCKFH HPKDIQIPVT GQENGCAEHD ASVGSFDSIM SVKPPFVPFT  240
PASLHNTKGL PVRPGEVDCP FYLKTGSCKY GATCRYSHPE RAVISISVAP GLGHAMMTSS  300
ASSMNVGLIN PAAMVLPTID PRLGQATLGL GVAVYPQRPG QTECEFYMKT GDCKFGERCK  360
YHHPIDRTAA TQSMPKQDVK LTLAGLPRRE GAVVCPFYMK TGACKYGSSC RFDHPPPGEA  420
VAMATVVQGS SSAPLSGKAV AMATTVQGSS SAPPLGEAVA MPTVTQGSSF AAEDGESNNN  480
NNTIVPEVAI SFGSTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-176	C3H family protein